#!/bin/bash
set -e

pkg="sim4"

if [ "$AUTOPKGTEST_TMP" = "" ] ; then
  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
fi

cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP

cd $AUTOPKGTEST_TMP

gunzip -r *

echo "TEST START"

/usr/bin/sim4 sample.cdna.fasta sample.gen.fasta 

/usr/bin/sim4 sample.cdna.fasta sample.gen.fasta  A=1 P=1 

/usr/bin/sim4 sample.cdna.fasta sample.gen.fasta  R=1

/usr/bin/sim4 sample.cdna.fasta sample.cdna.fasta  A=5 S=123..1020
        
/usr/bin/sim4 sample.cdna.fasta sample.gen.fasta  K=15 C=11 A=3 W=10

echo "PASS"
